Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024446.1 Corchorus olitorius cultivar O-4 contig24479, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5878
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31


Found at i:348 original size:10 final size:10

Alignment explanation


    Indices: 335--359  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        325 GAAAAATATC

                      
        335 AAAAAAATAA
          1 AAAAAAATAA

                      
        345 AAAAAAATAA
          1 AAAAAAATAA

                 
        355 AAAAA
          1 AAAAA

        360 TTTCGACCAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08


Consensus pattern (10 bp):   
AAAAAAATAA
Done.