Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024448.1 Corchorus olitorius cultivar O-4 contig24481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68587

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3701--3740
19
2.0
19
85
9
53
42
7
15
35
1.75
7225--7263
18
2.1
19
90
4
62
43
0
20
35
1.52
7694--7737
22
2.0
22
95
0
79
27
15
13
43
1.85
11373--11481
45
2.4
45
84
3
130
30
15
15
38
1.89
11518--11881
67
5.5
66
85
4
236
21
18
16
43
1.88
11596--12210
67
9.2
67
79
7
508
22
18
16
42
1.89
11519--12210
201
3.5
200
81
7
716
22
18
16
42
1.89
15513--15573
29
2.1
29
93
0
104
11
11
32
44
1.76
15519--15581
29
2.2
29
91
0
99
11
11
34
42
1.76
15609--15646
14
2.7
14
100
0
76
15
7
36
39
1.77
23931--23990
29
2.1
29
90
0
93
11
11
35
41
1.78
27603--27651
24
2.0
24
92
0
80
30
16
24
28
1.96
33117--33153
11
3.4
11
92
0
56
43
8
0
48
1.32
34609--34667
15
4.1
14
75
25
52
25
1
0
72
0.93
35495--36355
218
4.0
215
79
5
868
42
13
15
28
1.85
37258--37640
191
2.0
191
95
0
694
30
9
24
35
1.87
42798--42889
28
3.3
28
95
0
166
14
41
32
11
1.82
47615--47653
15
2.7
15
88
11
55
76
2
10
10
1.10
48450--48480
9
3.4
9
90
0
53
83
0
0
16
0.64
48470--48513
20
2.1
21
83
8
54
75
0
18
6
1.02
49590--49633
19
2.3
19
84
7
54
81
2
15
0
0.78
51711--51757
22
2.1
23
88
4
69
17
12
10
59
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51879--51923
22
2.0
22
95
0
81
33
4
15
46
1.66
52771--52849
32
2.5
32
95
0
140
32
13
29
24
1.94
52977--53014
20
1.9
20
88
0
58
76
13
2
7
1.11
53194--53237
19
2.3
18
85
14
54
81
4
9
4
0.96
58779--58819
14
2.9
15
85
7
59
17
31
2
48
1.60
58804--58842
19
2.1
19
85
0
51
12
30
5
51
1.62
58773--58852
28
2.9
27
81
11
90
13
32
2
51
1.55
59662--59688
14
1.9
14
100
0
54
44
11
0
44
1.39
60095--60175
27
3.0
27
71
18
71
46
7
1
44
1.39
63946--63991
25
2.0
23
84
16
60
30
0
21
47
1.51
67679--67799
54
2.2
54
90
8
185
57
8
9
25
1.58
67786--67818
14
2.5
13
90
9
57
75
0
6
18
1.00
68177--68221
23
2.0
23
82
8
56
24
15
0
60
1.36

Tables:   1

The End!