Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024449.1 Corchorus olitorius cultivar O-4 contig24482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41525

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1145--1213
29
2.3
31
82
7
81
31
15
14
37
1.88
2527--2577
21
2.5
21
77
3
59
70
0
25
3
1.04
3430--3484
7
7.6
7
88
8
83
80
0
20
0
0.72
3410--3484
29
2.6
29
82
6
89
74
0
24
1
0.89
3425--3484
15
4.0
15
91
6
95
78
0
21
0
0.75
3652--3681
15
2.0
15
93
0
51
23
0
0
76
0.78
3951--4009
30
2.0
30
86
6
84
38
11
5
44
1.63
11326--11389
32
2.0
32
90
0
101
40
18
17
23
1.91
11925--11950
13
2.0
13
100
0
52
53
0
0
46
1.00
14544--14580
1
37.0
1
94
0
65
0
0
2
97
0.18
14538--14580
16
2.8
16
92
3
70
0
0
6
93
0.37
17006--17070
3
21.7
3
100
0
130
66
0
0
33
0.92
18055--18132
32
2.6
30
80
13
90
33
16
29
20
1.95
21126--21186
30
2.0
30
96
0
113
22
36
9
31
1.87
25840--26045
102
2.0
102
97
0
385
41
16
9
33
1.80
28999--29055
19
2.8
21
78
10
73
35
14
21
29
1.92
30011--30037
14
1.9
14
100
0
54
22
11
0
66
1.22
30177--30257
36
2.2
37
82
4
101
38
13
17
30
1.88
30704--30795
34
2.7
35
77
14
102
52
27
7
13
1.67
30749--30867
35
3.4
35
80
7
136
44
28
8
18
1.79

Tables:   1

The End!