Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024450.1 Corchorus olitorius cultivar O-4 contig24483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2873
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38


Found at i:2335 original size:16 final size:15

Alignment explanation


    Indices: 2310--2339  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       2300 TGTCACTCTT

                           
       2310 TAAAAAAATAAAAAA
          1 TAAAAAAATAAAAAA

                           
       2325 TAAAAATAATAAAAA
          1 TAAAAA-AATAAAAA

       2340 GGTTAGTAAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (15 bp):   
TAAAAAAATAAAAAA
Done.