Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024451.1 Corchorus olitorius cultivar O-4 contig24484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66128
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:1657 original size:47 final size:47
Alignment explanation
Indices: 1603--2522 Score: 938
Period size: 47 Copynumber: 19.0 Consensus size: 47
1593 AAATCAGAGC
* * *
1603 AATTAAACTAAAGAGCAAGAGAAGAAGGAAACAGTTTAATTCTAGAT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
1650 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTTTAACAATTCTGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAG--TTT---AATTCTGGGT
* * *
1702 AATTAAACTAAAGAGTAAAAGAAGAAGTAAAAAGAGACTTGTTTAATTCTGGGT
1 AATTAAACTAAAGAG--CAAG-AGAAG-AAGAA-A-AC-AGTTTAATTCTGGGT
* * * *
1756 AATCAAACT-AA-A--AAG-TAAGAAGAAAAGAGTTTAATTCAGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* * * *
1798 AATTAAACTAAAAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* * * *
1845 AATTAAACTAAA-AACTAAAAAGTAAGAAGAAAAGAGTTTAATTCTGAGT
1 AATTAAACTAAAGAGC--AAGAG-AAGAAGAAAACAGTTTAATTCTGGGT
* * *
1894 AATTAAACTAAAAAGTAAGAGAAGAAGAAAAGAGTTTAATTCCT-GGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATT-CTGGGT
* * * * * *
1941 AATTAAATTAAAAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTGGGA
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* * ** *
1988 AAATAAACTAAAAATTAAGAGAAGAAGAAAAGAGTTTAATT-TGGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCT-GGGT
2035 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
*
2082 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTAGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
2129 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTTAAACAGTTCTGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAG-TTT--A-A-TTCTGGGT
* * * *
2181 AATTAAACTAAAGAGTAAAAGAAAAAGTAAACAGAGGCTAGTTTAATTCCGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAG--AA-A-A--C-AGTTTAATTCTGGGT
* * * * *
2235 AATTAAACTAAAAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTAGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* * * * *
2282 AATTAAACTAAAAAGTAAGAAAAGAAGAAAAGAGTTTAATTCGGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
*
2329 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTTGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* *
2376 AATTAAACTAAAGAGCAAAAAAAGAAGTACACAGAGGCTAGTTTAATTCTGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAG-A-A-A-A--C-AGTTTAATTCTGGGT
* * * * *
2430 AATTAAACTAAAAAGTAAAAGAAGAAGAAAAGAGTTTAATTATGGGT
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
** *
2477 AATTAAACTAAAGAGCAAGAGAAGTGGAAAACAGTTTGATTCTGGG
1 AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGG
2523 AAATCAAGCT
Statistics
Matches: 752, Mismatches: 77, Indels: 88
0.82 0.08 0.10
Matches are distributed among these distances:
42 21 0.03
43 3 0.00
44 2 0.00
45 4 0.01
46 10 0.01
47 466 0.62
48 18 0.02
49 40 0.05
50 5 0.01
51 4 0.01
52 57 0.08
53 4 0.01
54 92 0.12
55 7 0.01
56 6 0.01
57 4 0.01
58 6 0.01
59 3 0.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (47 bp):
AATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
Found at i:1921 original size:195 final size:188
Alignment explanation
Indices: 1603--2522 Score: 930
Period size: 195 Copynumber: 4.8 Consensus size: 188
1593 AAATCAGAGC
* * * * * *
1603 AATTAAACTAAAGAGCAAGAGAAGAAGGAAACAGTTTAATTCTAGATAATTAAACTAAAGAGC-A
1 AATTAAACTAAAGAGTAAGAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAA-AACTA
* *
1667 AGAGAAGAAGAAAACAGTTTTTAACAATTCTGGGTAATTAAACTAAAGAGTAA-AAGAAGAAGTA
65 AGAGAAGAAGAAAAGAG--TTT---AATTCTGGGTAATTAAACTAAAAAGTAAGAAGAAGAAG--
* * *
1731 AAAAGAGACTTGTTTAATTCTGGGTAATCAAACT-AA-A-AAG-TAAGAAGAAAAGAGTTTAATT
123 -AAA-AGA---GTTTAATTCTGGGTAATTAAACTAAAGACAAGAGAAGAAGAAAACAGTTTAATT
*
1792 CAGGGT
183 CTGGGT
* *
1798 AATTAAACTAAAAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTGGGTAATTAAACTAAAAACTAA
1 AATTAAACTAAAGAGTAAGAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAACT-A
* *
1863 AAAGTAAGAAGAAAAGAGTTTAATTCTGAGTAATTAAACTAAAAAGTAAG-AGAAGAAGAAAAGA
65 AGAG-AAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAGAAGAAGAAAAGA
* * * * * *
1927 GTTTAATTCCT-GGTAATTAAATTAAAAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTGGGA
129 GTTTAATT-CTGGGTAATTAAACTAAAGA-CAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* * * *
1988 AAATAAACTAAAAATTAAGAGAAGAAGAAAAGAGTTTAATT-TGGGGTAATTAAACTAAAGAGC-
1 AATTAAACTAAAGAGTAAGAGAAGAAGAAAAGAGTTTAATTCT-GGGTAATTAAACTAAA-AACT
* * * *
2051 AAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAACTAAAGAGCAAG-AGAAGAAGAAAACA
64 AAGAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAGAAGAAGAAAAGA
*
2115 GTTTAATTCTAGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTTAAACAGTTCTGGG
129 GTTTAATTCTGGGTAATTAAACTAAAGA-CAAGAGAAGAAGAAAACAG-TTT--A-A-TTCTGGG
2180 T
188 T
* * *
2181 AATTAAACTAAAGAGTAAAAGAAAAAGTAAACAGAGGCTAGTTTAATTCCGGGTAATTAAACTAA
1 AATTAAACTAAAGAGTAAGAGAAGAAG--AA-A-A-G--AGTTTAATTCTGGGTAATTAAACTAA
* * *
2246 AAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTAGGTAATTAAACTAAAAAGTAAGAA-AAGAAGA
59 AAACTAAGAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAGAAGAAGA
* *
2310 AAAGAGTTTAATTCGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTTGG
124 AAAGAGTTTAATTCTGGGTAATTAAACTAAAGA-CAAGAGAAGAAGAAAACAGTTTAATTCTGGG
2375 T
188 T
* * *
2376 AATTAAACTAAAGAGCAAAAAAAGAAGTACACAGAGGCTAGTTTAATTCTGGGTAATTAAACTAA
1 AATTAAACTAAAGAGTAAGAGAAGAAG-A-A-A-A-G--AGTTTAATTCTGGGTAATTAAACTAA
* * * * * **
2441 AAAGTAAAAGAAGAAGAAAAGAGTTTAATTATGGGTAATTAAACTAAAGAGCAAG-AGAAGTGGA
59 AAACTAAGAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAGAAGAAGA
* *
2505 AAACAGTTTGATTCTGGG
124 AAAGAGTTTAATTCTGGG
2523 AAATCAAGCT
Statistics
Matches: 630, Mismatches: 65, Indels: 60
0.83 0.09 0.08
Matches are distributed among these distances:
185 18 0.03
186 4 0.01
187 3 0.00
188 97 0.15
189 14 0.02
190 77 0.12
191 3 0.00
192 35 0.06
193 29 0.05
194 4 0.01
195 193 0.31
196 6 0.01
197 14 0.02
198 1 0.00
199 4 0.01
200 127 0.20
201 1 0.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (188 bp):
AATTAAACTAAAGAGTAAGAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAACTAA
GAGAAGAAGAAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAGAAGAAGAAAAGAGT
TTAATTCTGGGTAATTAAACTAAAGACAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
Found at i:2309 original size:294 final size:281
Alignment explanation
Indices: 1603--2491 Score: 1009
Period size: 294 Copynumber: 3.1 Consensus size: 281
1593 AAATCAGAGC
* * * * * * * * *
1603 AATTAAACTAAAGAGCAAGAGAAGAAGGAAACAGTTTAATTCTAGATAATTAAACTAAAGAGCAA
1 AATTAAACTAAAGAGTAAAAGAAAAAGAAAAGAGTTTAATTCCAGGTAATTAAACTAAAAAGTAA
* * *
1668 GAGAAGAAGAAAACAGTTTTTAACAATTCTGGGTAATTAAACTAAAGAGTAA-AAGAAGAAGTAA
66 GAGAAGAAGGAAAGAG--TTT---AATTCTGGGTAATTAAACTAAAAAGTAAGAA-AAGAAG---
* * *
1732 AAAGAGACTTGTTTAATTCT-GGGTAATCAAACT-AA-A--AAG-TAAGAAGAAAAGAGTTTAAT
122 AAA-AGA---GTTTAATT-TGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAAT
* * * * *
1791 TCAGGGTAATTAAACTAAAAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTGGGTAATTAAACTAA
182 TCTGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAACTAA
* *
1856 AAACTAAAAAGTAAGAAGAAAAGAGTTTAATTCTGAGT
247 AAGC--AAAAG-AAGAAGAAAAGAGTTTAATTCTGGGT
* * * * *
1894 AATTAAACTAAAAAGTAAGAGAAGAAGAAAAGAGTTTAATTCCTGGTAATTAAATTAAAAAGTAA
1 AATTAAACTAAAGAGTAAAAGAAAAAGAAAAGAGTTTAATTCCAGGTAATTAAACTAAAAAGTAA
* * * *
1959 GAGAAGAAGGAAAGAGTTTAATTCTGGGAAAATAAACTAAAAATTAAGAGAAGAAGAAAAGAGTT
66 GAGAAGAAGGAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAAAGAAGAAAAGAGTT
2024 TAATTTGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAA
131 TAATTTGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAA
* *
2089 CTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTAGGTAATTAAACTAAAGAGCAAGAGAAGA
196 CTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAACTAAA-AGCAAAAGAAGA
*
2154 AGAAAACAGTTTTAAACAGTTCTGGGT
260 AGAAAAGAG-TTT--A-A-TTCTGGGT
*
2181 AATTAAACTAAAGAGTAAAAGAAAAAGTAAACAGAGGCTAGTTTAATTCCGGGTAATTAAACTAA
1 AATTAAACTAAAGAGTAAAAGAAAAAG--AA-A-A-G--AGTTTAATTCCAGGTAATTAAACTAA
*
2246 AAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTAGGTAATTAAACTAAAAAGTAAGAAAAGAAGAA
59 AAAGTAAGAGAAGAAGGAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAAAGAAGAA
* *
2311 AAGAGTTTAATTCGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTTGGT
124 AAGAGTTTAATTTGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGT
* *
2376 AATTAAACTAAAGAGCAAAAAAAGAAGTACACAGAGGCTAGTTTAATTCTGGGTAATTAAACTAA
189 AATTAAACTAAAGAGCAAGAGAAGAAG-A-A-A-A--C-AGTTTAATTCTGGGTAATTAAACT-A
* *
2441 AAAGTAAAAGAAGAAGAAAAGAGTTTAATTATGGGT
246 AAAGCAAAAGAAGAAGAAAAGAGTTTAATTCTGGGT
2477 AATTAAACTAAAGAG
1 AATTAAACTAAAGAG
2492 CAAGAGAAGT
Statistics
Matches: 521, Mismatches: 49, Indels: 51
0.84 0.08 0.08
Matches are distributed among these distances:
278 1 0.00
279 20 0.04
280 2 0.00
281 1 0.00
282 15 0.03
283 13 0.02
284 78 0.15
285 3 0.01
286 31 0.06
287 32 0.06
289 5 0.01
290 1 0.00
291 70 0.13
292 1 0.00
294 172 0.33
295 1 0.00
296 23 0.04
297 2 0.00
298 2 0.00
300 4 0.01
301 41 0.08
302 3 0.01
ACGTcount: A:0.51, C:0.07, G:0.20, T:0.23
Consensus pattern (281 bp):
AATTAAACTAAAGAGTAAAAGAAAAAGAAAAGAGTTTAATTCCAGGTAATTAAACTAAAAAGTAA
GAGAAGAAGGAAAGAGTTTAATTCTGGGTAATTAAACTAAAAAGTAAGAAAAGAAGAAAAGAGTT
TAATTTGGGGTAATTAAACTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAA
CTAAAGAGCAAGAGAAGAAGAAAACAGTTTAATTCTGGGTAATTAAACTAAAAGCAAAAGAAGAA
GAAAAGAGTTTAATTCTGGGT
Found at i:2565 original size:22 final size:22
Alignment explanation
Indices: 2540--2669 Score: 190
Period size: 22 Copynumber: 6.0 Consensus size: 22
2530 GCTAAGCAGC
2540 AAAAGAAAGAGTAATCAGAAGT
1 AAAAGAAAGAGTAATCAGAAGT
2562 AAAAGAAAGAGTAATCAG-AGT
1 AAAAGAAAGAGTAATCAGAAGT
* *
2583 AAAAGAAAGAGTAATCAAAAGC
1 AAAAGAAAGAGTAATCAGAAGT
* *
2605 CAAAGAAAGAGTAATCAGAAGC
1 AAAAGAAAGAGTAATCAGAAGT
*
2627 AGAAGAAAGAGTAATCAGAAGT
1 AAAAGAAAGAGTAATCAGAAGT
* *
2649 AAGAGAAAAAGTAATCAGAAG
1 AAAAGAAAGAGTAATCAGAAG
2670 ATTAGAGTAA
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
21 20 0.21
22 77 0.79
ACGTcount: A:0.58, C:0.07, G:0.23, T:0.12
Consensus pattern (22 bp):
AAAAGAAAGAGTAATCAGAAGT
Found at i:2616 original size:65 final size:66
Alignment explanation
Indices: 2541--2665 Score: 207
Period size: 65 Copynumber: 1.9 Consensus size: 66
2531 CTAAGCAGCA
* *
2541 AAAGAAAGAGTAATCAGAAGTAAAAGAAAGAGTAATCAG-AGTAAAAGAAAGAGTAATCAAAAGC
1 AAAGAAAGAGTAATCAGAAGCAAAAGAAAGAGTAATCAGAAGTAAAAGAAAAAGTAATCAAAAGC
2605 C
66 C
* *
2606 AAAGAAAGAGTAATCAGAAGCAGAAGAAAGAGTAATCAGAAGTAAGAGAAAAAGTAATCA
1 AAAGAAAGAGTAATCAGAAGCAAAAGAAAGAGTAATCAGAAGTAAAAGAAAAAGTAATCA
2666 GAAGATTAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
65 37 0.67
66 18 0.33
ACGTcount: A:0.58, C:0.07, G:0.22, T:0.12
Consensus pattern (66 bp):
AAAGAAAGAGTAATCAGAAGCAAAAGAAAGAGTAATCAGAAGTAAAAGAAAAAGTAATCAAAAGC
C
Found at i:2709 original size:47 final size:45
Alignment explanation
Indices: 2643--2743 Score: 116
Period size: 47 Copynumber: 2.2 Consensus size: 45
2633 AAGAGTAATC
* *
2643 AGAAGTAAGAGAAAAAGTAATCAGAAGATTAGAG-TAATTAAGCTAAA
1 AGAAGTAAAAGAAAAAGTAATCAGAAG-TAAG-GTTAATTAAGCT-AA
* * *
2690 AGAAGTAAAAGCAAGAGTAATCAGTAGTAAGGTTAATTAAGCTAA
1 AGAAGTAAAAGAAAAAGTAATCAGAAGTAAGGTTAATTAAGCTAA
2735 A-AAGTAAAA
1 AGAAGTAAAA
2744 AGTAATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
44 8 0.17
45 4 0.08
46 13 0.27
47 23 0.48
ACGTcount: A:0.54, C:0.05, G:0.21, T:0.20
Consensus pattern (45 bp):
AGAAGTAAAAGAAAAAGTAATCAGAAGTAAGGTTAATTAAGCTAA
Found at i:10834 original size:20 final size:22
Alignment explanation
Indices: 10798--10838 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
10788 TTGTTCAGGC
10798 TCGACTCGAGAAAAATTCGAGT
1 TCGACTCGAGAAAAATTCGAGT
10820 TCGACTCG-G-AAAATTCGAG
1 TCGACTCGAGAAAAATTCGAG
10839 CCGAGCTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (22 bp):
TCGACTCGAGAAAAATTCGAGT
Found at i:10847 original size:20 final size:20
Alignment explanation
Indices: 10799--10847 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
10789 TGTTCAGGCT
*
10799 CGACTCGAGAAAAATTCGAGTT
1 CGACTCG-G-AAAATTCGAGTC
10821 CGACTCGGAAAATTCGAG-C
1 CGACTCGGAAAATTCGAGTC
10840 CGAGCTCG
1 CGA-CTCG
10848 AACTCGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 1 0.04
22 7 0.28
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (20 bp):
CGACTCGGAAAATTCGAGTC
Found at i:15208 original size:2 final size:2
Alignment explanation
Indices: 15203--15232 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15193 TGTGTGTGTC
15203 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15233 AGGATGATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:16625 original size:153 final size:154
Alignment explanation
Indices: 16346--16658 Score: 592
Period size: 153 Copynumber: 2.0 Consensus size: 154
16336 CTCAAGATGA
16346 GGTGCTTTATTTCTACTTTTATTTTGTATTCCCTTAGGATTTCTAAATACTCATAACTCCCTTTT
1 GGTGCTTTATTTCTACTTTTATTTTGTATTCCCTTAGGATTTCTAAATACTCATAACTCCCTTTT
16411 TTTAGATTCCCTTCCTTTTTTGTTAAATTTGGCCATTTTTTCTATAGGGTTTAAGTTCTGCACAG
66 TTTAGATTCCCTTCCTTTTTTGTTAAATTTGGCCATTTTTTCTATAGGGTTTAAGTTCTGCACAG
16476 AATAATGATGACCAAGAAAGGGAG
131 AATAATGATGACCAAGAAAGGGAG
*
16500 GGTGCTTTATTTCTACTTTTATTTTGTATTCCCTTAGGATTTCT-AATTCTCATAACTCCCTTTT
1 GGTGCTTTATTTCTACTTTTATTTTGTATTCCCTTAGGATTTCTAAATACTCATAACTCCCTTTT
16564 TTTAGATTCCCTTCCTTTTTTGTTAAATTTGGCCATTTTTTCTATAGGGTTTAAGTTCTGCACAG
66 TTTAGATTCCCTTCCTTTTTTGTTAAATTTGGCCATTTTTTCTATAGGGTTTAAGTTCTGCACAG
**
16629 AATAATGATGACCTGGAAAGGGAG
131 AATAATGATGACCAAGAAAGGGAG
16653 GGTGCT
1 GGTGCT
16659 GGGGGAAACA
Statistics
Matches: 156, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
153 112 0.72
154 44 0.28
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (154 bp):
GGTGCTTTATTTCTACTTTTATTTTGTATTCCCTTAGGATTTCTAAATACTCATAACTCCCTTTT
TTTAGATTCCCTTCCTTTTTTGTTAAATTTGGCCATTTTTTCTATAGGGTTTAAGTTCTGCACAG
AATAATGATGACCAAGAAAGGGAG
Found at i:20010 original size:39 final size:39
Alignment explanation
Indices: 19943--20027 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 39
19933 CCAAGGATTA
*
19943 TTGTTCCTCATTTTATGATAGCGGTGCTT-TATGAACTGC
1 TTGTTCCTCATTCTATGATAGCGGTGCTTCT-TGAACTGC
* * * * *
19982 TTGTTCCTCATTCTGTGATTGTGTTGCTTCTTGGACTGC
1 TTGTTCCTCATTCTATGATAGCGGTGCTTCTTGAACTGC
20021 TTGTTCC
1 TTGTTCC
20028 GCTCCTTGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 38 0.97
40 1 0.03
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.47
Consensus pattern (39 bp):
TTGTTCCTCATTCTATGATAGCGGTGCTTCTTGAACTGC
Found at i:20051 original size:18 final size:18
Alignment explanation
Indices: 20028--20063 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
20018 TGCTTGTTCC
20028 GCTCCTTGAGATAAAGAT
1 GCTCCTTGAGATAAAGAT
20046 GCTCCTTGAGATAAAGAT
1 GCTCCTTGAGATAAAGAT
20064 TCCACTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (18 bp):
GCTCCTTGAGATAAAGAT
Found at i:20944 original size:51 final size:51
Alignment explanation
Indices: 20884--20987 Score: 156
Period size: 51 Copynumber: 2.0 Consensus size: 51
20874 CAAGACATTT
*
20884 AACTTCATCATTGATGTTTCAA-TTCTCTAGCTCAATCAACCGTGCAACCTA
1 AACTTCATCACTGATGTTTCAATTTC-CTAGCTCAATCAACCGTGCAACCTA
** *
20935 AACTTCATCACTGATGTTTGTATTTCCTTGCTCAATCAACCGTGCAACCTA
1 AACTTCATCACTGATGTTTCAATTTCCTAGCTCAATCAACCGTGCAACCTA
20986 AA
1 AA
20988 TCAAATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
51 45 0.94
52 3 0.06
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.34
Consensus pattern (51 bp):
AACTTCATCACTGATGTTTCAATTTCCTAGCTCAATCAACCGTGCAACCTA
Found at i:22170 original size:29 final size:29
Alignment explanation
Indices: 22138--22205 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
22128 CCTTTAGAAA
*
22138 AGCATCTTTTTCAGATGGAGTCATTTGAT
1 AGCAACTTTTTCAGATGGAGTCATTTGAT
*
22167 AGCAAGTTTTTCAGATGGAGTCATTTGAT
1 AGCAACTTTTTCAGATGGAGTCATTTGAT
* *
22196 TGCAAGTTTT
1 AGCAACTTTT
22206 AGTCATTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (29 bp):
AGCAACTTTTTCAGATGGAGTCATTTGAT
Found at i:30686 original size:23 final size:22
Alignment explanation
Indices: 30651--30701 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
30641 ATATCAAATA
30651 TTTGCTGGGAAAAATGTTGATGT
1 TTTGCTGGG-AAAATGTTGATGT
** *
30674 TTTGCTGTTAAAATGTTGTTGT
1 TTTGCTGGGAAAATGTTGATGT
30696 TTTGCT
1 TTTGCT
30702 TATTTGTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.20, C:0.06, G:0.25, T:0.49
Consensus pattern (22 bp):
TTTGCTGGGAAAATGTTGATGT
Found at i:31223 original size:12 final size:12
Alignment explanation
Indices: 31206--31236 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
31196 TACCCTATGT
31206 AAACACGACACG
1 AAACACGACACG
*
31218 AAACACGACAGG
1 AAACACGACACG
31230 AAACACG
1 AAACACG
31237 GATTGCCAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.29, G:0.19, T:0.00
Consensus pattern (12 bp):
AAACACGACACG
Found at i:34538 original size:73 final size:73
Alignment explanation
Indices: 34451--34590 Score: 262
Period size: 73 Copynumber: 1.9 Consensus size: 73
34441 TCAAGGGATC
*
34451 TCGCATTGAATCTCTCCAGGCCACCATTCACTTTGTCAATCTTCACAAATTGATACTATCTCAAG
1 TCGCATTGAATCTCTCCAAGCCACCATTCACTTTGTCAATCTTCACAAATTGATACTATCTCAAG
34516 TGAAAGGG
66 TGAAAGGG
*
34524 TCGCATTGAATCTCTCCAAGCCACCATTCACTTTGTCAATCTTCACAAATTGGTACTATCTCAAG
1 TCGCATTGAATCTCTCCAAGCCACCATTCACTTTGTCAATCTTCACAAATTGATACTATCTCAAG
34589 TG
66 TG
34591 TCAACTCTCT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (73 bp):
TCGCATTGAATCTCTCCAAGCCACCATTCACTTTGTCAATCTTCACAAATTGATACTATCTCAAG
TGAAAGGG
Found at i:35925 original size:19 final size:19
Alignment explanation
Indices: 35905--35941 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
35895 AATTAATTAT
35905 TTTA-ATATTAAATTTTTA
1 TTTATATATTAAATTTTTA
*
35923 TTTATATATTATATTTTTA
1 TTTATATATTAAATTTTTA
35942 CCTAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATATATTAAATTTTTA
Found at i:36747 original size:2 final size:2
Alignment explanation
Indices: 36740--36820 Score: 126
Period size: 2 Copynumber: 40.5 Consensus size: 2
36730 CTCTATCTTC
* * * *
36740 CT CT CT CT CT CT CT AT CT AT CT AT CT AT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
36782 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
36821 CCCCAAGTCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.05, C:0.46, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:42896 original size:15 final size:15
Alignment explanation
Indices: 42861--42903 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
42851 ATAATTGCTA
*
42861 TCATTTTGAAATGAT
1 TCATTTTAAAATGAT
*
42876 TCATTTTAAAATGCT
1 TCATTTTAAAATGAT
*
42891 TTATTTCTAAAAT
1 TCATTT-TAAAAT
42904 CTTCAAACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 18 0.75
16 6 0.25
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (15 bp):
TCATTTTAAAATGAT
Found at i:44067 original size:44 final size:44
Alignment explanation
Indices: 44014--44100 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
44004 AAGGAGGATT
*
44014 ATTGAAAGAAGATCCACTTATGTGGAAGATTATTATCAAAGAAG
1 ATTGAAAGAAGATCCACATATGTGGAAGATTATTATCAAAGAAG
*
44058 ATTGAAAGAAGATCCACATATGTGGAGGATTATTATCAAAGAA
1 ATTGAAAGAAGATCCACATATGTGGAAGATTATTATCAAAGAA
44101 ATTTATTTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (44 bp):
ATTGAAAGAAGATCCACATATGTGGAAGATTATTATCAAAGAAG
Found at i:44268 original size:41 final size:40
Alignment explanation
Indices: 44179--44276 Score: 115
Period size: 41 Copynumber: 2.4 Consensus size: 40
44169 ATTTTTGCTT
* * * *
44179 ATTCAAGATAAAGTCATCAAGGCCCTTGAATCAAATTATT
1 ATTCAAGATCAAGTCACCAAGACCCTTGAATCAAATTATA
* *
44219 ATCCCAAGATCAAGTCACCAAGACCCTTGAATTAAATTATCA
1 AT-TCAAGATCAAGTCACCAAGACCCTTGAATCAAATTAT-A
*
44261 ATTCAAGACCAAGTCA
1 ATTCAAGATCAAGTCA
44277 TTCGACCCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.04
41 44 0.92
42 2 0.04
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (40 bp):
ATTCAAGATCAAGTCACCAAGACCCTTGAATCAAATTATA
Found at i:47841 original size:1 final size:1
Alignment explanation
Indices: 47835--47870 Score: 72
Period size: 1 Copynumber: 36.0 Consensus size: 1
47825 CTAATAATAT
47835 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
47871 CTCGCTAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:48773 original size:39 final size:39
Alignment explanation
Indices: 48730--48808 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
48720 AAGGAAGATT
* *
48730 ATTGAAAGAAGATCCACGTATGTGGAGGATTATTATCAA
1 ATTGAAAGAAGATCCACATATGTGAAGGATTATTATCAA
*
48769 ATTGAAAGAAGATCCACATATTTGAAGGATTATTATCAA
1 ATTGAAAGAAGATCCACATATGTGAAGGATTATTATCAA
48808 A
1 A
48809 GAAATTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (39 bp):
ATTGAAAGAAGATCCACATATGTGAAGGATTATTATCAA
Found at i:48961 original size:44 final size:41
Alignment explanation
Indices: 48891--48991 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 41
48881 ATTTTTGTTT
* *
48891 ATTCAAGATCAAGTCATCAAGGCCCTTGA-ATCAAATTATTATCA
1 ATTCAAGATCAAGTCACCAAGACCCTT-ATAT-AAA--ATTATCA
* *
48935 ATTCAAGATCAAGTCGCCAAGACCCTTATATTAAATTATCA
1 ATTCAAGATCAAGTCACCAAGACCCTTATATAAAATTATCA
*
48976 ATTCAAGACCAAGTCA
1 ATTCAAGATCAAGTCA
48992 TTCGACCCTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 21 0.42
43 3 0.06
44 26 0.52
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.28
Consensus pattern (41 bp):
ATTCAAGATCAAGTCACCAAGACCCTTATATAAAATTATCA
Found at i:49545 original size:10 final size:10
Alignment explanation
Indices: 49530--49563 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
49520 TGCGCGCGCG
49530 CAGACACACA
1 CAGACACACA
49540 CAGACACACA
1 CAGACACACA
* *
49550 CACACACATA
1 CAGACACACA
49560 CAGA
1 CAGA
49564 TATATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.50, C:0.38, G:0.09, T:0.03
Consensus pattern (10 bp):
CAGACACACA
Found at i:49568 original size:2 final size:2
Alignment explanation
Indices: 49563--49589 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
49553 ACACATACAG
49563 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
49590 CGAATAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50666 original size:22 final size:22
Alignment explanation
Indices: 50578--50803 Score: 110
Period size: 22 Copynumber: 10.2 Consensus size: 22
50568 AATGATATAT
* *
50578 AATTTCATAGAGAGATTATCGA
1 AATTTCATAGAGAGGTTATCAA
* *
50600 AATTTCATACTA-TGG-TATCAAA
1 AATTTCATA-GAGAGGTTATC-AA
* *
50622 AATTT-ATAGGGAGATTAAT-AA
1 AATTTCATAGAGAGGTT-ATCAA
50643 AATTTCATAGAGAGGTTATCAAA
1 AATTTCATAGAGAGGTTATC-AA
**
50666 AAAATCATATG-GAGGTTATCAA
1 AATTTCATA-GAGAGGTTATCAA
*
50688 AATTTCATA-AGAAGGTTTATTAA
1 AATTTCATAGAG-AGG-TTATCAA
* ** *
50711 AATTTTATAGTCAGGTTATCAG
1 AATTTCATAGAGAGGTTATCAA
* * *
50733 TATTTCATTAG-GAGTTTATCAC
1 AATTTCA-TAGAGAGGTTATCAA
* *
50755 AATTTCATA-AGTTA-ATCATCAA
1 AATTTCATAGAG--AGGTTATCAA
* * *
50777 AATTTCATAGTGTGGTTATCAT
1 AATTTCATAGAGAGGTTATCAA
50799 AATTT
1 AATTT
50804 AGTGGTAATT
Statistics
Matches: 151, Mismatches: 34, Indels: 38
0.68 0.15 0.17
Matches are distributed among these distances:
21 21 0.14
22 86 0.57
23 43 0.28
24 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (22 bp):
AATTTCATAGAGAGGTTATCAA
Found at i:50870 original size:2 final size:2
Alignment explanation
Indices: 50863--50891 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
50853 CTAAAACTAG
50863 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50892 TAAAATTCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51284 original size:20 final size:20
Alignment explanation
Indices: 51230--51272 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
51220 CAGCCCATTC
51230 ATTT-AGCCACTTGGACTTG
1 ATTTCAGCCACTTGGACTTG
*
51249 ATTTCACCCACTTGGACTTG
1 ATTTCAGCCACTTGGACTTG
51269 ATTT
1 ATTT
51273 TGGCCACCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (20 bp):
ATTTCAGCCACTTGGACTTG
Found at i:53032 original size:21 final size:20
Alignment explanation
Indices: 53008--53050 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
52998 CCTTAGGCAA
53008 CTCCAATGAGCTTGAAACCTT
1 CTCCAATGAGCTTGAAA-CTT
*
53029 CTCCAATGAGTTTGAAACTT
1 CTCCAATGAGCTTGAAACTT
53049 CT
1 CT
53051 TTGTGAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (20 bp):
CTCCAATGAGCTTGAAACTT
Found at i:58321 original size:32 final size:32
Alignment explanation
Indices: 58258--58322 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
58248 TGCTGGCAAC
**
58258 TGTATGAACATGGAATTTTAATTTTCGGAAAT
1 TGTATGAACATGGAATTTTAATTTTAAGAAAT
*
58290 TGTATGAACAT-GACTTTTTAATTTTAAGAAAT
1 TGTATGAACATGGA-ATTTTAATTTTAAGAAAT
58322 T
1 T
58323 CAGAATTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.43
Consensus pattern (32 bp):
TGTATGAACATGGAATTTTAATTTTAAGAAAT
Found at i:58568 original size:15 final size:16
Alignment explanation
Indices: 58538--58570 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
58528 TGTGAGATTG
58538 CTGGGAATGACACATTC
1 CTGGGAAT-ACACATTC
58555 CTGGGAAT-CACATTC
1 CTGGGAATACACATTC
58570 C
1 C
58571 CACTGGGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (16 bp):
CTGGGAATACACATTC
Found at i:60427 original size:18 final size:18
Alignment explanation
Indices: 60404--60439 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60394 TTTGATAAAC
60404 CATTGAAAATTTTAATTT
1 CATTGAAAATTTTAATTT
60422 CATTGAAAATTTTAATTT
1 CATTGAAAATTTTAATTT
60440 TCAATAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
CATTGAAAATTTTAATTT
Found at i:61269 original size:2 final size:2
Alignment explanation
Indices: 61262--61290 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
61252 TGGGAACGTT
61262 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
61291 TTGTGATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64438 original size:30 final size:31
Alignment explanation
Indices: 64023--64436 Score: 503
Period size: 30 Copynumber: 13.7 Consensus size: 31
64013 GCTAATATAT
*
64023 ATTGACACCAGAAGTTGTCAATG-GCCTTGCA
1 ATTGACACCAGAAGTTGTC-ATGCTCCTTGCA
* *
64054 AATGACACCAGAAGTTGTCATG-GCCTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
* *
64084 AATGACACCAGAAGTTGTCATG-GCCTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
* *
64114 AATGACACCAGAAGTTGTCATG-GCCTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
* *
64144 AATGACACCAGAAGTTGTCATG-GCCTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
** *
64174 ATTGACATTAGAAGTTGTCAATGAT-CTTGCA
1 ATTGACACCAGAAGTTGTC-ATGCTCCTTGCA
* *
64205 ATTGACACCAGAAATTGTCGTGCTCC-TGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
* *
64235 GTTGACACCAGAACTTGTCATGCTCC-TGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
* *
64265 ATTGACACCAGAACTTGTCATGCT-GTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
**
64295 ATTGACACCAGAAGTTGTCAT-CTTGTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
*
64325 ATTGACACCAGAAGTTGTCATGCT-CTTGCC
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
64355 ATTGACACCAGAAGTTGTCATGCT-CTTGCA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
* **
64385 ATTGACACCAGAAGTTGTCATGATAATT-CA
1 ATTGACACCAGAAGTTGTCATGCTCCTTGCA
64415 ATTGACACCAGAAGTTGTCATG
1 ATTGACACCAGAAGTTGTCATG
64437 ATTTTACCTT
Statistics
Matches: 355, Mismatches: 21, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
29 2 0.01
30 305 0.86
31 48 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (31 bp):
ATTGACACCAGAAGTTGTCATGCTCCTTGCA
Done.