Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024458.1 Corchorus olitorius cultivar O-4 contig24491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20975

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3226--3336
55
2.1
53
93
3
186
47
9
5
36
1.60
3294--3354
25
2.4
25
80
17
72
52
3
3
40
1.34
3611--3846
116
2.0
120
87
5
347
47
1
13
36
1.53
5315--5380
34
2.0
34
87
3
98
25
10
36
27
1.89
9538--9587
13
4.1
13
77
12
52
20
18
6
56
1.62
9770--9820
20
2.4
22
83
16
79
25
31
5
37
1.80
9779--9820
20
2.1
20
100
0
84
21
30
4
42
1.73
10697--10743
20
2.4
20
96
3
87
51
34
4
10
1.56
13869--13911
12
3.7
12
78
6
52
20
18
6
53
1.67
14375--14450
40
1.9
40
97
0
143
38
14
14
32
1.87
19257--19655
54
7.7
52
85
6
451
29
17
5
48
1.68
19307--19655
155
2.2
156
90
2
542
29
18
4
47
1.69
19257--19655
101
3.9
100
82
10
411
29
17
5
48
1.68
20392--20440
6
7.8
6
93
6
80
36
14
0
48
1.44
20392--20440
25
2.0
25
92
8
82
36
14
0
48
1.44
20657--20737
39
2.0
40
88
2
119
49
8
3
38
1.51
20728--20773
24
2.0
23
91
4
74
32
6
6
54
1.52

Tables:   1

The End!