Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024460.1 Corchorus olitorius cultivar O-4 contig24493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20332

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4405--4582
51
3.6
50
81
2
214
43
3
16
36
1.65
4405--4627
101
2.2
99
80
4
243
42
4
16
37
1.67
5273--5607
40
8.4
40
82
6
347
18
24
18
38
1.92
5274--5565
160
1.8
160
83
5
394
18
24
17
39
1.92
5270--5761
121
4.1
119
77
8
396
16
27
17
39
1.90
5374--5768
41
10.0
41
81
10
301
14
29
16
39
1.88
5604--5663
31
1.9
32
89
3
95
10
36
6
46
1.64
5563--5704
72
2.0
73
85
4
198
12
32
11
42
1.79
5536--5745
113
1.9
113
86
4
307
12
31
15
40
1.84
8258--8293
18
2.1
18
89
5
56
36
11
5
47
1.63
9085--9135
11
4.8
10
81
11
57
9
19
49
21
1.77
9085--9142
21
2.7
21
86
2
80
10
18
48
22
1.78

Tables:   1

The End!