Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024464.1 Corchorus olitorius cultivar O-4 contig24497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 760

Length: 1267
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27


Found at i:342 original size:16 final size:15

Alignment explanation


    Indices: 301--342  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        291 ACAGAGATTG

                   *       
        301 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                  *        
        316 ACAGAATACAATTAA
          1 ACAGAAAACAATTAA

                        
        331 ACTAGAAAACAA
          1 AC-AGAAAACAA

        343 AGCAAAGTAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  15   15  0.65
  16    8  0.35

ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.