Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002447.1 Corchorus olitorius cultivar O-4 contig02447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2668
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:51 original size:24 final size:25

Alignment explanation


    Indices: 1--53  Score: 65
    Period size: 25  Copynumber: 2.2  Consensus size: 25

                          *     *    
          1 TTTTTTGTTTTTTTTTCTTAGTAGT
          1 TTTTTTGTTTTTTTGTCTTACTAGT

                                      
         26 TTTTTTGTTTTCTTTGTC-TACT-GT
          1 TTTTTTGTTTT-TTTGTCTTACTAGT

                
         50 TTTT
          1 TTTT

         54 GTATTGGAAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  24    6  0.24
  25   14  0.56
  26    5  0.20

ACGTcount: A:0.06, C:0.08, G:0.11, T:0.75


Consensus pattern (25 bp):   
TTTTTTGTTTTTTTGTCTTACTAGT
Done.