Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024472.1 Corchorus olitorius cultivar O-4 contig24505, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7564
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Found at i:1089 original size:19 final size:18

Alignment explanation


    Indices: 1056--1091  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       1046 TGGAAATAAT

                              
       1056 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
       1074 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

       1092 TAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA

Found at i:2042 original size:98 final size:98

Alignment explanation


    Indices: 1898--2095  Score: 369
    Period size: 98  Copynumber: 2.0  Consensus size: 98

       1888 AAAGGTTTTT

                                                                             
       1898 CATGGATTTTCTTGGAAGAAATTGGAGATCTCGTGTTCGTGAATGAAGAATCTATGGAGTCAATT
          1 CATGGATTTTCTTGGAAGAAATTGGAGATCTCGTGTTCGTGAATGAAGAATCTATGGAGTCAATT

                                             
       1963 TTATGACAATTGAAGTCATAAAGTTGAAAGCTA
         66 TTATGACAATTGAAGTCATAAAGTTGAAAGCTA

                                         *                                   
       1996 CATGGATTTTCTTGGAAGAAATTGGAGATTTCGTGTTCGTGAATGAAGAATCTATGGAGTCAATT
          1 CATGGATTTTCTTGGAAGAAATTGGAGATCTCGTGTTCGTGAATGAAGAATCTATGGAGTCAATT

                 *              *            
       2061 TTATGCCAATTGAAGTCATAGAGTTGAAAGCTA
         66 TTATGACAATTGAAGTCATAAAGTTGAAAGCTA

              
       2094 CA
          1 CA

       2096 AAGTTCCAAA


Statistics
Matches: 97,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  98   97  1.00

ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33


Consensus pattern (98 bp):   
CATGGATTTTCTTGGAAGAAATTGGAGATCTCGTGTTCGTGAATGAAGAATCTATGGAGTCAATT
TTATGACAATTGAAGTCATAAAGTTGAAAGCTA
Done.