Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024477.1 Corchorus olitorius cultivar O-4 contig24510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47335

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
606--672
30
2.2
31
86
7
93
59
7
8
23
1.53
5536--5567
1
32.0
1
93
0
55
96
3
0
0
0.20
5539--5578
8
5.2
8
90
6
57
90
10
0
0
0.47
5536--5571
11
3.3
11
92
0
63
94
5
0
0
0.31
16965--17071
3
35.7
3
96
0
196
66
0
0
31
1.04
18888--19094
21
9.9
21
81
4
240
27
14
24
34
1.93
18884--19094
42
5.0
42
90
3
336
28
14
23
33
1.94
19192--19246
17
3.0
17
75
15
56
34
25
12
27
1.92
19209--19261
21
2.5
21
90
0
79
35
18
15
30
1.92
22080--22113
16
2.1
16
88
0
50
2
5
17
73
1.16
22750--22786
18
2.1
18
100
0
74
40
10
10
37
1.75
23966--24027
30
2.0
32
90
9
101
43
14
9
32
1.78
23968--24037
30
2.2
32
85
12
92
44
15
10
30
1.79
34500--34537
17
2.2
17
86
9
51
34
18
18
28
1.95
35232--35279
14
3.5
14
72
16
55
60
14
18
6
1.55
35233--35284
27
1.9
27
100
0
104
61
13
19
5
1.52
35281--35312
15
2.2
14
94
5
55
65
15
6
12
1.44
37041--37082
17
2.5
17
96
0
75
57
11
7
23
1.59
37743--37802
17
3.6
17
72
20
63
61
11
15
11
1.56
37744--37807
33
1.9
33
96
0
119
57
12
15
14
1.65

Tables:   1

The End!