Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024478.1 Corchorus olitorius cultivar O-4 contig24511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13828

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2862--2901
22
1.9
21
85
10
55
37
2
5
55
1.35
9056--9084
14
2.1
14
100
0
58
48
0
6
44
1.29
9323--9378
22
2.5
22
80
5
60
37
8
10
42
1.71
9414--9467
22
2.5
22
75
6
56
33
16
12
37
1.87
9480--9540
23
2.7
23
87
2
79
42
14
9
32
1.79
9568--9626
21
2.7
22
82
10
77
38
10
11
38
1.76
9655--9684
15
2.0
15
93
0
51
43
6
6
43
1.57
9738--9882
22
6.6
23
72
18
112
35
15
8
40
1.79
10001--10364
22
16.6
22
66
19
122
33
16
8
41
1.79
9978--10146
44
3.8
45
77
8
170
34
11
10
43
1.74
9978--10142
88
1.9
87
85
1
231
33
11
10
44
1.75
10387--10624
22
10.8
21
77
8
197
36
18
11
34
1.86
10387--10533
68
2.2
66
81
4
170
36
18
11
33
1.87
10789--10827
20
2.0
20
85
10
53
64
2
5
28
1.28

Tables:   1

The End!