Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024480.1 Corchorus olitorius cultivar O-4 contig24513, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9605

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1626--1669
12
3.5
12
77
22
54
63
0
0
36
0.95
2337--2556
22
10.1
22
75
5
178
31
11
17
39
1.86
2344--2556
87
2.5
86
82
6
225
31
11
16
39
1.85
2346--2555
65
3.2
66
80
4
203
31
11
16
40
1.84
2753--2805
28
2.0
26
82
14
63
37
13
11
37
1.80
2837--2932
50
1.9
50
95
0
174
43
17
7
31
1.76
4782--4841
29
2.1
30
84
9
88
40
10
1
48
1.47
6550--6587
19
2.1
19
95
5
69
26
10
26
36
1.89
6761--6842
32
2.7
30
76
14
80
34
15
25
24
1.95
7466--7495
5
6.0
5
92
0
51
0
43
0
56
0.99
8246--8271
12
2.2
12
100
0
52
38
7
0
53
1.30
8299--8775
22
21.4
22
68
13
154
35
16
10
36
1.84
8299--8411
40
2.7
40
82
8
120
40
12
9
37
1.76
8578--8627
26
1.9
26
91
0
82
28
32
10
30
1.89
8549--8716
46
3.7
44
77
10
117
33
19
10
36
1.86
9086--9121
17
2.1
17
94
0
63
30
5
22
41
1.76

Tables:   1

The End!