Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024489.1 Corchorus olitorius cultivar O-4 contig24522, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1360
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33


Found at i:1047 original size:15 final size:15

Alignment explanation


    Indices: 1024--1058  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1014 GGGGAATAAT

                *          
       1024 CAATCCAAAAACAAA
          1 CAATTCAAAAACAAA

                       *   
       1039 CAATTCAAAAATAAA
          1 CAATTCAAAAACAAA

                 
       1054 CAATT
          1 CAATT

       1059 TTCTATCCTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.63, C:0.20, G:0.00, T:0.17


Consensus pattern (15 bp):   
CAATTCAAAAACAAA
Done.