Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002449.1 Corchorus olitorius cultivar O-4 contig02449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:911 original size:76 final size:76

Alignment explanation


    Indices: 774--925  Score: 177
    Period size: 76  Copynumber: 2.0  Consensus size: 76

        764 ACAAGGACCC

                                       *                       *             
        774 CGACTCCACCTGGGTGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCA-AG
          1 CGACTCCACCTGGGTGCCCACATGGTTACCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGA-

                        
        838 TGGGCAGTGTCA
         65 TGGGCAGTGTCA

                    *                    *                            **     
        850 CGACTCCAGCTGGGTGCCCACATGGTTTATC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
          1 CGACTCCACCTGGGTGCCCACATGG-TTACCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA

                   *      
        912 GATGGGCTGTGTCA
         63 GATGGGCAGTGTCA

        926 TAGCTCTTCA


Statistics
Matches: 65,  Mismatches: 7, Indels: 8
        0.81            0.09        0.10

Matches are distributed among these distances:
  75    4  0.06
  76   55  0.85
  77    6  0.09

ACGTcount: A:0.18, C:0.29, G:0.28, T:0.25


Consensus pattern (76 bp):   
CGACTCCACCTGGGTGCCCACATGGTTACCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Done.