Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024497.1 Corchorus olitorius cultivar O-4 contig24530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130598

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1685--1718
11
3.1
11
100
0
68
38
8
44
8
1.67
2088--2263
21
8.4
21
94
1
259
26
26
17
29
1.97
5877--5916
21
1.9
21
84
0
53
50
0
15
35
1.44
7250--7284
17
2.0
18
88
5
54
65
17
0
17
1.27
7250--7285
18
2.0
18
88
0
54
66
16
0
16
1.25
7331--7451
62
2.0
61
86
4
172
33
18
9
38
1.84
11738--11779
21
2.0
21
100
0
84
33
28
19
19
1.96
13579--13726
33
4.5
32
79
9
145
43
21
8
26
1.82
14937--14970
10
3.5
10
96
4
61
35
38
0
26
1.57
15757--15796
15
2.6
16
92
4
64
12
10
12
65
1.49
19182--19230
21
2.3
21
82
0
62
16
40
22
20
1.91
23388--23427
15
2.6
16
92
4
64
12
10
12
65
1.49
28805--28847
19
2.3
19
84
8
52
76
11
11
0
1.02
35635--35677
18
2.4
18
84
7
52
72
2
16
9
1.21
36801--36833
12
3.0
11
87
12
50
27
0
9
63
1.24
37034--37059
3
8.7
3
100
0
52
69
0
30
0
0.89
42516--42555
20
2.0
21
85
14
57
12
25
12
50
1.75
43873--43923
21
2.4
21
100
0
102
29
9
21
39
1.85
54550--54578
10
2.7
11
89
10
51
6
6
10
75
1.17
61179--61237
24
2.4
24
85
2
73
30
13
23
32
1.93
63067--63106
20
2.0
20
95
0
71
35
22
20
22
1.96
63644--64229
293
2.0
293
99
0
1163
26
22
22
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68339--68376
11
3.5
11
89
10
51
39
0
2
57
1.12
82480--82581
22
4.6
22
67
16
66
44
6
8
40
1.62
83914--83988
32
2.3
32
97
0
141
29
17
21
32
1.96
84985--85016
15
2.1
15
94
0
55
46
28
9
15
1.77
85597--85723
66
1.9
66
87
3
184
25
8
22
42
1.82
85609--85738
33
3.9
33
74
4
120
26
8
21
43
1.81
109350--109406
25
2.3
24
82
8
62
68
7
1
22
1.23
117301--117330
15
2.0
15
93
0
51
26
0
3
70
1.03
119147--119185
15
2.5
16
87
4
53
17
10
10
61
1.55
119529--119590
25
2.4
25
81
8
61
46
8
14
30
1.73
121710--121768
21
2.8
21
84
0
64
8
52
27
11
1.66
121911--121953
21
2.0
21
86
8
61
13
46
25
13
1.81
125290--125328
15
2.5
16
87
4
53
20
10
10
58
1.59
127916--128070
21
7.4
21
95
1
242
29
17
27
26
1.98

Tables:   1

The End!