Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024501.1 Corchorus olitorius cultivar O-4 contig24534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57526

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1692--1717
11
2.4
11
100
0
52
7
15
7
69
1.35
2477--2518
15
2.7
15
92
3
66
11
9
14
64
1.50
3319--3364
23
2.0
23
83
12
58
19
26
13
41
1.88
5686--5767
29
2.9
29
79
1
76
18
25
23
32
1.97
9666--9730
32
2.0
32
81
0
76
32
13
20
33
1.91
10099--10149
21
2.4
21
96
0
93
23
11
33
31
1.91
10430--10456
14
1.9
14
100
0
54
22
18
14
44
1.86
10579--10670
45
2.0
45
93
0
157
25
17
19
38
1.93
12301--12328
2
14.0
2
100
0
56
50
0
0
50
1.00
14071--14840
54
14.4
53
85
5
894
47
6
19
27
1.74
27172--27204
16
2.1
16
94
0
57
39
21
12
27
1.88
28612--28724
50
2.3
50
93
0
190
49
23
8
17
1.75
28712--28736
2
12.5
2
100
0
50
52
48
0
0
1.00
28608--28748
50
2.7
50
81
10
160
51
24
7
16
1.69
28760--29261
251
2.0
250
97
1
943
51
16
15
17
1.77
29989--30019
2
15.5
2
100
0
62
0
51
0
48
1.00
33455--33523
33
2.1
34
88
2
104
43
15
31
8
1.78
39381--39434
26
2.2
24
80
12
56
61
3
12
22
1.47
39467--39593
52
2.4
52
89
2
184
33
18
11
37
1.86
39557--39692
37
3.7
37
95
1
229
29
17
16
36
1.93
44442--44469
2
14.0
2
100
0
56
50
0
0
50
1.00
46710--46846
70
2.0
69
86
4
195
22
12
15
49
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47763--47867
23
4.7
22
76
16
92
15
17
43
23
1.86
47782--47865
42
2.0
42
95
0
150
14
14
45
26
1.83
48278--48426
71
2.1
70
93
1
253
10
16
29
42
1.82
49873--50256
128
3.0
126
89
3
565
13
29
30
26
1.93
50200--50318
59
2.0
59
96
0
220
10
26
36
26
1.88
50646--50683
17
2.2
17
100
0
76
15
15
47
21
1.82
50661--50775
59
1.9
59
100
0
230
9
26
36
26
1.87
51653--51682
12
2.4
13
88
11
53
66
13
6
13
1.43
54973--55058
25
3.3
25
78
6
82
29
30
33
6
1.84
54910--55364
181
2.5
181
87
1
669
30
25
31
12
1.93
55173--55256
25
3.2
25
79
12
96
27
29
35
7
1.83
55256--55289
16
2.1
16
88
5
50
38
17
29
14
1.90
55380--55670
118
2.5
118
86
2
422
30
25
31
12
1.93
55780--55860
36
2.2
36
91
0
126
35
19
27
17
1.94
55824--55933
58
1.9
58
82
0
139
32
20
27
20
1.97

Tables:   1

The End!