Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024502.1 Corchorus olitorius cultivar O-4 contig24535, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44420

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
356--799
76
5.9
76
84
3
522
22
33
24
18
1.97
356--816
148
3.1
151
79
6
519
22
33
24
19
1.97
343--816
224
2.1
224
85
3
659
22
33
24
18
1.97
5438--5505
30
2.3
30
97
0
127
1
35
41
22
1.63
5544--5650
54
2.0
54
81
3
126
6
29
38
25
1.81
17622--17654
16
2.1
16
94
0
57
24
21
12
42
1.86
20149--20189
16
2.6
16
78
17
50
9
19
31
39
1.84
21449--21565
55
2.1
55
85
1
155
41
5
15
37
1.72
22486--22577
41
2.2
41
94
0
157
35
0
17
46
1.48
22536--22580
15
2.9
15
83
6
54
33
0
13
53
1.40
22625--22659
16
2.2
16
89
0
52
48
37
11
2
1.54
23118--23156
21
1.9
20
89
5
60
53
0
5
41
1.23
23225--23485
138
1.9
138
82
7
332
46
2
11
39
1.53
24636--24672
2
19.5
2
83
10
51
48
0
2
48
1.15
25010--25052
22
1.9
23
90
4
70
37
13
20
27
1.91
32866--32928
30
2.1
30
85
5
83
28
15
31
23
1.96
33048--33089
21
2.0
21
85
0
57
26
23
21
28
1.99
35207--35293
33
2.6
33
85
0
111
43
22
8
25
1.80
35875--35905
15
2.1
15
100
0
62
16
6
25
51
1.68
37362--37391
11
2.7
11
89
0
51
46
6
40
6
1.56
37780--37821
21
2.0
21
100
0
84
23
33
9
33
1.87
40778--40820
22
1.9
23
95
4
79
37
13
23
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42648--42796
79
1.9
79
88
2
228
31
15
18
34
1.92
42805--42876
31
2.3
31
90
0
108
36
29
12
22
1.91

Tables:   1

The End!