Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024509.1 Corchorus olitorius cultivar O-4 contig24542, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5040
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:3049 original size:39 final size:39

Alignment explanation


    Indices: 2995--3072  Score: 147
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       2985 TGTTTACGAT

                                                   
       2995 TTACAAATAAGTAATTAAATCAATCAACAAATAGTTGTA
          1 TTACAAATAAGTAATTAAATCAATCAACAAATAGTTGTA

                                      *            
       3034 TTACAAATAAGTAATTAAATCAATCAGCAAATAGTTGTA
          1 TTACAAATAAGTAATTAAATCAATCAACAAATAGTTGTA

       3073 GCATGTGAAG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31


Consensus pattern (39 bp):   
TTACAAATAAGTAATTAAATCAATCAACAAATAGTTGTA
Done.