Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024510.1 Corchorus olitorius cultivar O-4 contig24543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37501

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1208--1249
22
1.9
22
85
0
57
38
21
21
19
1.94
2377--2420
23
1.9
23
81
9
54
61
0
13
25
1.32
2373--2572
105
2.0
103
88
6
300
52
2
11
34
1.51
4647--4898
131
1.9
132
91
2
418
49
2
11
36
1.53
7861--7892
16
2.0
16
93
0
55
53
0
0
46
1.00
7845--7892
19
2.5
19
83
10
62
47
0
0
52
1.00
8018--8052
18
1.9
18
94
0
61
28
8
11
51
1.67
8371--8399
2
14.5
2
100
0
58
51
48
0
0
1.00
13079--13121
15
2.9
15
82
6
52
23
32
13
30
1.93
15698--15778
40
2.0
40
95
0
144
35
8
20
34
1.84
17075--17109
18
1.9
18
88
0
52
51
2
40
5
1.40
24701--24778
38
2.1
38
100
0
156
29
23
24
23
1.99
30004--30035
2
16.0
2
100
0
64
50
0
0
50
1.00
37068--37096
14
2.1
14
100
0
58
20
17
27
34
1.95

Tables:   1

The End!