Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024520.1 Corchorus olitorius cultivar O-4 contig24553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2516
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:996 original size:99 final size:100

Alignment explanation


    Indices: 816--1036  Score: 293
    Period size: 99  Copynumber: 2.2  Consensus size: 100

        806 TACGATCGGT

                            *         *        *                          *  
        816 AGAAGTGTCAGATATGTAGATCCTTAGGTTGATTATAGACTTGAAAGATTTAATGGTCGTAGGAC
          1 AGAAGTGTCAGATATGGAGATCCTTACGTTGATTACAGACTTGAAAGATTTAATGGTCGTAGAAC

                   *         *                 
        881 CCCAACATGGAAGAACGGCAACAACGAAGATCAGC
         66 CCCAACACGGAAGAACGACAACAACGAAGATCAGC

                    *                                  *       *             
        916 AGAA-TGTTAGATATGGAGATCCTTACGTTGATTACAGACTTGTAAGATTTGATGGT-GATAGAA
          1 AGAAGTGTCAGATATGGAGATCCTTACGTTGATTACAGACTTGAAAGATTTAATGGTCG-TAGAA

               *                    **       *  
        979 CCCGAACACGGAAGAACGACAACATTGAAGATCGGC
         65 CCCCAACACGGAAGAACGACAACAACGAAGATCAGC

             *                    
       1015 AAAAGTGTCAGATATGGAGATC
          1 AGAAGTGTCAGATATGGAGATC

       1037 TTCCCTCGTG


Statistics
Matches: 104,  Mismatches: 15, Indels: 4
        0.85            0.12        0.03

Matches are distributed among these distances:
  98    1  0.01
  99   83  0.80
 100   20  0.19

ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24


Consensus pattern (100 bp):   
AGAAGTGTCAGATATGGAGATCCTTACGTTGATTACAGACTTGAAAGATTTAATGGTCGTAGAAC
CCCAACACGGAAGAACGACAACAACGAAGATCAGC
Done.