Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024526.1 Corchorus olitorius cultivar O-4 contig24559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2900

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--272
35
7.8
35
87
1
384
27
13
19
39
1.89
1963--2199
4
60.8
4
66
15
104
26
7
0
65
1.23
1986--2164
11
16.3
10
73
15
81
26
6
0
66
1.20
1995--2151
27
6.3
27
72
16
126
28
6
0
64
1.22
2029--2212
46
4.0
46
90
2
264
26
7
1
65
1.25
2100--2262
8
21.9
8
69
15
75
25
11
1
61
1.36
2072--2151
23
3.8
19
72
25
54
31
5
0
63
1.15
1983--2184
19
11.3
19
70
18
96
26
7
0
65
1.25
2137--2200
27
2.4
27
81
5
76
25
9
1
64
1.33
2220--2276
24
2.4
24
85
5
80
22
17
1
57
1.49
2183--2264
32
2.4
32
76
8
83
23
13
1
62
1.38

Tables:   1

The End!