Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024529.1 Corchorus olitorius cultivar O-4 contig24562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7016
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31


Found at i:2776 original size:41 final size:40

Alignment explanation


    Indices: 2731--2818  Score: 115
    Period size: 41  Copynumber: 2.1  Consensus size: 40

       2721 ATTCAATCGG

                           *                   *      
       2731 GTCCCTAATTTAGGCTGT-TATTTATTCATTGATTTAATTTT
          1 GTCCCTAATTTA--CAGTATATTTATTCATTGATTCAATTTT

                                      *              
       2772 GTCCCTAATTTACAGTAATATTTATTTATTGATTCAATTTT
          1 GTCCCTAATTTACAGT-ATATTTATTCATTGATTCAATTTT

                  
       2813 GTCCCT
          1 GTCCCT

       2819 GGTTTAGAAT


Statistics
Matches: 42,  Mismatches: 3, Indels: 4
        0.86            0.06        0.08

Matches are distributed among these distances:
  39    3  0.07
  41   39  0.93

ACGTcount: A:0.24, C:0.15, G:0.10, T:0.51


Consensus pattern (40 bp):   
GTCCCTAATTTACAGTATATTTATTCATTGATTCAATTTT
Done.