genome.fa.s24532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024532.1 Corchorus olitorius cultivar O-4 contig24565, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134984

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8227--8257	15	2.1	15	93	0	53	35	16	6	41	1.74
12633--12665	17	1.9	17	100	0	66	42	15	18	24	1.88
13500--13529	15	2.0	15	93	0	51	50	0	36	13	1.42
14230--14610	190	2.0	190	97	0	726	30	11	25	32	1.90
16818--16884	30	2.2	30	100	0	134	25	25	10	38	1.87
19251--19283	17	1.9	17	88	11	50	57	18	0	24	1.40
21207--21257	17	3.1	16	86	8	66	21	21	21	35	1.96
37133--37252	54	2.3	53	84	5	147	43	10	25	20	1.84
38590--38667	38	2.1	38	97	0	147	12	23	19	44	1.84
40441--40477	19	1.9	19	88	0	56	43	21	13	21	1.87
40995--41035	4	10.8	4	79	10	50	21	2	2	73	1.07
40995--41035	11	3.6	11	90	9	57	21	2	2	73	1.07
42481--42967	69	7.3	68	82	8	529	20	19	17	42	1.89
44347--44384	18	2.1	18	100	0	76	15	39	15	28	1.89
63146--63222	33	2.3	33	95	0	136	38	19	18	23	1.93
66915--66955	21	2.0	21	90	9	66	34	9	24	31	1.88
87216--87444	77	3.0	77	87	1	291	17	18	31	31	1.94
89801--89922	50	2.4	50	93	0	199	18	23	23	33	1.97
89905--89944	21	1.9	21	94	0	71	15	22	37	25	1.93
93287--93336	21	2.4	21	90	6	75	4	26	42	28	1.73
93595--93636	13	3.1	14	83	16	54	59	0	9	30	1.29
109453--109496	22	2.0	22	86	0	61	27	22	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109450--109566	52	2.2	52	96	0	216	23	26	23	26	2.00
109670--109715	21	2.2	21	84	0	56	32	21	10	34	1.88
111204--111366	66	2.5	66	91	0	263	26	9	20	43	1.82
111204--111417	33	6.5	32	76	7	153	28	9	20	42	1.82
111204--111414	66	3.2	66	84	4	194	28	9	19	42	1.82
113225--113337	21	5.4	20	83	8	136	29	18	25	26	1.98
113225--113337	42	2.7	42	87	2	156	29	18	25	26	1.98
118464--118501	18	2.1	19	90	5	60	23	0	13	63	1.30
118463--118501	19	2.1	19	90	9	62	23	0	12	64	1.28
120875--120912	20	1.9	19	89	5	58	65	15	5	13	1.43
123703--124028	51	6.5	51	85	4	414	23	26	11	37	1.90
123703--124028	101	3.3	100	86	3	433	23	26	11	37	1.90
123971--124428	232	2.0	232	99	0	898	29	21	13	34	1.92
124614--124821	64	3.2	64	89	0	326	23	25	16	34	1.96
126885--126926	21	2.0	21	95	0	75	26	14	16	42	1.86
126921--126957	18	2.1	18	100	0	74	40	5	21	32	1.76

Tables:   1

The End!