Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024534.1 Corchorus olitorius cultivar O-4 contig24567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32


Found at i:53 original size:27 final size:27

Alignment explanation


    Indices: 9--77  Score: 120
    Period size: 27  Copynumber: 2.6  Consensus size: 27

          1 CGGCTCAT

                                       
          9 GACCATCAGGATCCACCTTGGCATCCC
          1 GACCATCAGGATCCACCTTGGCATCCC

                      *  *             
         36 GACCATCAGGGTCGACCTTGGCATCCC
          1 GACCATCAGGATCCACCTTGGCATCCC

                           
         63 GACCATCAGGATCCA
          1 GACCATCAGGATCCA

         78 ATTTATCTCA


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  27   38  1.00

ACGTcount: A:0.23, C:0.38, G:0.22, T:0.17


Consensus pattern (27 bp):   
GACCATCAGGATCCACCTTGGCATCCC
Done.