Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024541.1 Corchorus olitorius cultivar O-4 contig24574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1915
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33


Found at i:907 original size:21 final size:21

Alignment explanation


    Indices: 851--907  Score: 69
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        841 TTTATAACAC

                 *               
        851 CTTGTTCCTGCCTCATCTCTT
          1 CTTGTGCCTGCCTCATCTCTT

                  **  *     *    
        872 CTTGTGAATGTCTCATTTCTT
          1 CTTGTGCCTGCCTCATCTCTT

                           
        893 CTTGTGCCTGCCTCA
          1 CTTGTGCCTGCCTCA

        908 GATGTTGGAT


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.09, C:0.32, G:0.14, T:0.46


Consensus pattern (21 bp):   
CTTGTGCCTGCCTCATCTCTT
Done.