Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024545.1 Corchorus olitorius cultivar O-4 contig24578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18388

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
774--979
107
1.9
108
82
9
258
32
21
18
27
1.97
741--981
53
4.4
54
80
8
233
31
20
19
27
1.97
982--1586
35
17.3
35
93
0
951
39
20
13
27
1.89
2745--2825
39
2.1
39
84
9
103
37
14
12
35
1.84
3004--3049
21
2.2
22
84
7
60
8
21
2
67
1.29
3410--3456
14
3.5
13
81
16
51
29
17
10
42
1.82
12423--12482
29
2.0
30
87
6
86
38
8
18
35
1.81
13845--13883
16
2.5
15
83
8
51
12
12
12
61
1.57
13845--13884
15
2.6
16
88
4
55
12
12
12
62
1.55
15577--15626
25
1.9
25
84
8
64
32
16
14
38
1.88

Tables:   1

The End!