Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024547.1 Corchorus olitorius cultivar O-4 contig24580, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3576
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:1359 original size:16 final size:15

Alignment explanation


    Indices: 1340--1371  Score: 55
    Period size: 16  Copynumber: 2.1  Consensus size: 15

       1330 TGCTTTTTGC

                            
       1340 GTTTTCTTCTTTCTTT
          1 GTTTTCTTCTTT-TTT

                           
       1356 GTTTTCTTCTTTTTT
          1 GTTTTCTTCTTTTTT

             
       1371 G
          1 G

       1372 CATTTTGTGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    4  0.25
  16   12  0.75

ACGTcount: A:0.00, C:0.16, G:0.09, T:0.75


Consensus pattern (15 bp):   
GTTTTCTTCTTTTTT
Done.