Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024549.1 Corchorus olitorius cultivar O-4 contig24582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35151

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1512--1626
56
2.0
57
93
1
196
38
7
11
42
1.70
1826--1875
22
2.3
20
83
10
55
46
2
16
36
1.58
3801--3856
23
2.5
22
77
16
60
23
12
3
60
1.47
4415--4448
18
1.9
17
88
5
50
58
8
0
32
1.29
8788--8812
11
2.3
11
100
0
50
52
8
8
32
1.60
10263--10647
177
2.2
177
85
3
508
36
17
15
31
1.90
10734--10775
23
1.9
22
90
9
68
61
16
7
14
1.53
11251--11292
14
3.2
14
80
12
54
30
0
7
61
1.22
14443--14468
2
13.0
2
100
0
52
50
0
0
50
1.00
21570--21594
13
1.9
13
100
0
50
48
0
0
52
1.00
21723--21864
69
2.0
71
94
4
252
36
9
7
46
1.64
22291--22388
48
2.0
48
90
0
151
25
8
15
51
1.71
22301--22377
27
3.1
27
63
27
69
27
10
14
48
1.76
25489--25650
60
2.7
59
83
7
193
37
16
19
26
1.93
25549--25650
31
3.4
30
67
15
84
39
16
19
24
1.92
25692--25854
60
2.7
59
86
5
238
26
19
17
36
1.94
25724--25823
29
3.4
29
67
15
78
29
19
16
36
1.93
26870--26998
55
2.4
54
85
7
181
31
1
7
59
1.35
28916--29037
26
4.8
24
68
20
70
9
39
36
13
1.79
28954--29048
26
3.7
25
71
17
70
9
38
35
15
1.80
28908--29037
51
2.6
51
87
1
190
10
37
37
14
1.80
29095--29162
26
2.6
26
79
9
84
75
0
22
2
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29090--29162
10
7.0
10
75
18
60
76
0
20
2
0.90
31394--31543
78
1.9
80
87
2
223
34
12
1
51
1.48
31631--31795
77
2.2
77
89
4
246
33
13
1
50
1.53
32268--32345
29
2.7
29
85
0
111
19
15
23
42
1.89

Tables:   1

The End!