Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024553.1 Corchorus olitorius cultivar O-4 contig24586, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33918

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
768--803
19
1.9
18
88
5
54
27
22
8
41
1.82
7660--7802
76
1.9
76
81
5
173
18
27
28
25
1.98
9921--9956
19
1.9
18
88
5
54
27
22
8
41
1.82
11551--11642
45
2.0
46
97
2
177
45
21
19
13
1.84
11671--11708
18
2.2
17
86
13
51
73
0
26
0
0.83
14064--14303
41
5.8
41
84
4
277
29
14
19
37
1.91
14760--15316
157
3.5
157
92
2
904
32
8
24
34
1.86
16139--16195
18
3.1
18
78
12
62
8
38
21
31
1.84
23187--23228
15
2.7
15
92
3
66
64
14
9
11
1.50
29167--29215
21
2.3
21
82
6
55
40
14
28
16
1.87
33256--33289
17
1.9
17
88
5
50
14
0
11
73
1.10

Tables:   1

The End!