Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024556.1 Corchorus olitorius cultivar O-4 contig24589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44111

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
363--443
39
2.0
40
81
6
94
39
4
4
50
1.46
1362--1427
33
2.0
33
96
0
123
24
10
12
53
1.69
1402--1517
58
2.0
58
98
0
223
42
0
11
46
1.39
17922--18000
34
2.4
34
91
2
133
45
7
20
26
1.77
23822--23870
25
2.0
25
100
0
98
34
20
32
12
1.90
24252--24297
23
2.0
23
100
0
92
17
21
21
39
1.93
26888--27006
31
3.8
31
93
0
175
37
23
17
21
1.94
28485--28519
4
8.8
4
100
0
70
77
0
0
22
0.78
32957--33020
32
2.0
32
96
3
121
29
12
34
23
1.92
33259--33300
10
4.3
10
75
6
50
57
23
2
16
1.51
35411--35467
27
2.1
27
93
0
96
24
43
12
19
1.85
35571--35626
26
2.1
27
83
3
69
58
1
5
33
1.31
41210--41240
16
1.9
16
93
0
53
22
9
25
41
1.84
43129--43375
4
62.2
4
65
12
80
60
0
11
27
1.34
43230--43283
19
2.9
18
81
8
56
55
1
14
27
1.50
43250--43375
27
5.3
25
68
27
96
60
0
8
30
1.32
43232--43375
46
3.2
46
94
3
238
59
0
9
29
1.34
43277--43377
19
4.9
19
75
19
69
61
0
7
30
1.24
43785--43836
26
2.0
26
100
0
104
50
26
0
23
1.50

Tables:   1

The End!