Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024558.1 Corchorus olitorius cultivar O-4 contig24591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42698

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163--230
28
2.5
28
88
7
95
20
48
11
19
1.80
173--230
28
2.1
27
93
3
98
22
46
12
18
1.82
15804--15833
15
2.0
15
93
0
51
43
26
10
20
1.83
17396--17438
11
3.9
11
81
0
50
39
20
11
27
1.88
22309--22351
11
3.9
11
81
0
50
39
20
11
27
1.88
22989--23034
21
2.2
21
92
0
74
23
6
26
43
1.78
23092--23210
46
2.6
46
96
2
215
22
5
29
42
1.77
23506--23535
1
30.0
1
100
0
60
100
0
0
0
0.00
26352--26403
19
2.8
20
71
11
56
48
0
1
50
1.12
36398--36427
15
1.9
16
93
6
53
53
6
10
30
1.60
36628--36695
34
2.0
34
100
0
136
32
23
11
32
1.91
40033--40066
17
2.0
17
94
0
59
32
0
5
61
1.20
40891--40926
17
2.1
17
94
0
63
36
19
2
41
1.66

Tables:   1

The End!