Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024560.1 Corchorus olitorius cultivar O-4 contig24593, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3878
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32


Found at i:2530 original size:18 final size:19

Alignment explanation


    Indices: 2509--2544  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       2499 TTGAAATTAT

                               
       2509 TCTTCAA-TGGTCTTCAAA
          1 TCTTCAATTGGTCTTCAAA

                     *        
       2527 TCTTCAATTTGTCTTCAA
          1 TCTTCAATTGGTCTTCAA

       2545 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.25, C:0.22, G:0.08, T:0.44


Consensus pattern (19 bp):   
TCTTCAATTGGTCTTCAAA

Done.