Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024562.1 Corchorus olitorius cultivar O-4 contig24595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2859
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:499 original size:15 final size:16

Alignment explanation


    Indices: 468--507  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        458 TTACTTTGCT

                            
        468 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
        484 TTGTTTTCTA-TTTAA
          1 TTGTTTTCTAGTTTAA

               *     
        499 TTGCTTTCT
          1 TTGTTTTCT

        508 GTCAATCTCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   13  0.57
  16   10  0.43

ACGTcount: A:0.15, C:0.10, G:0.10, T:0.65


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.