Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024564.1 Corchorus olitorius cultivar O-4 contig24597, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2302
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25


Found at i:768 original size:22 final size:22

Alignment explanation


    Indices: 742--794  Score: 106
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        732 AAAACAAGGT

                                  
        742 AAACAAAACATTTTGATTTTTA
          1 AAACAAAACATTTTGATTTTTA

                                  
        764 AAACAAAACATTTTGATTTTTA
          1 AAACAAAACATTTTGATTTTTA

                     
        786 AAACAAAAC
          1 AAACAAAAC

        795 GTAAACTGAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   31  1.00

ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34


Consensus pattern (22 bp):   
AAACAAAACATTTTGATTTTTA
Done.