Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024565.1 Corchorus olitorius cultivar O-4 contig24598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25804

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1765--1844
40
2.0
40
97
0
151
48
6
25
20
1.72
2376--2449
26
2.8
27
77
4
78
40
22
14
21
1.90
2785--2811
2
13.5
2
100
0
54
48
0
0
51
1.00
6558--6603
21
2.2
21
100
0
92
8
23
4
63
1.42
9489--9556
26
2.6
27
80
4
75
13
14
30
41
1.84
14078--14152
27
2.8
27
95
0
132
17
21
26
34
1.95
18972--19301
166
2.0
164
96
1
606
21
24
15
38
1.92
21154--21201
12
4.2
11
92
7
78
54
16
4
25
1.60
21154--21198
23
1.9
24
95
4
83
51
17
4
26
1.65
23360--23503
50
2.9
50
90
2
229
29
27
13
29
1.94
23556--23814
50
5.1
50
88
2
383
37
11
24
27
1.89

Tables:   1

The End!