Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024574.1 Corchorus olitorius cultivar O-4 contig24607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86767

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1655--1787
66
2.0
66
98
0
257
33
32
16
18
1.93
6249--6284
2
18.0
2
100
0
72
50
0
0
50
1.00
6391--6496
22
4.9
21
72
9
79
32
14
8
45
1.75
6631--6934
22
14.1
22
72
13
116
34
16
9
39
1.81
6734--6781
16
2.7
18
81
9
55
41
14
8
35
1.76
6661--6951
44
6.8
43
71
15
151
32
17
9
40
1.82
6683--6933
66
3.9
66
75
11
189
33
16
8
41
1.79
7061--7116
22
2.6
21
72
13
51
35
14
12
37
1.84
7101--7161
22
2.8
22
82
0
77
34
8
11
45
1.70
7190--7244
22
2.6
22
82
5
69
32
16
9
41
1.80
7187--7244
20
2.8
20
78
14
64
34
15
8
41
1.78
7283--7430
22
6.7
22
75
9
122
39
16
8
35
1.80
7449--7625
68
2.7
66
81
5
196
38
19
7
33
1.80
7435--7666
22
10.5
22
70
10
132
38
18
7
35
1.80
7453--7670
66
3.3
65
78
6
213
39
19
7
33
1.80
7833--7871
20
2.0
20
85
10
53
64
5
2
28
1.28
12216--12241
13
2.0
13
100
0
52
53
30
0
15
1.42
22483--22532
21
2.4
21
96
0
91
28
16
28
28
1.97
23386--23432
26
1.9
24
87
12
69
27
27
4
40
1.75
26659--26725
21
3.2
21
93
0
116
29
16
28
25
1.97
36047--36141
41
2.3
41
83
0
127
44
13
15
26
1.84
38449--38498
22
2.3
22
96
0
91
52
18
16
14
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38881--38961
28
3.0
26
79
13
83
37
23
16
23
1.94
44667--44737
26
2.7
27
82
4
81
19
15
26
38
1.92
48153--48259
39
2.8
39
86
8
148
46
9
15
28
1.77
53040--53233
41
4.6
41
68
9
111
24
11
26
37
1.89
53031--53233
86
2.4
86
85
3
268
24
10
27
37
1.88
58952--58985
6
5.7
6
96
0
59
50
0
11
38
1.39
59962--59990
2
14.5
2
100
0
58
51
48
0
0
1.00
62954--63033
42
2.0
38
85
9
106
37
15
15
32
1.88
68612--68642
7
4.6
7
92
8
55
41
12
0
45
1.42
70001--70049
24
2.0
24
100
0
98
26
20
12
40
1.87
73659--73715
28
2.0
28
96
0
105
14
15
10
59
1.60
74509--74801
147
2.0
146
96
1
543
31
14
9
44
1.78
80717--80796
2
42.0
2
74
9
60
47
0
6
46
1.27
80692--80798
55
1.9
56
96
1
198
44
0
7
47
1.31

Tables:   1

The End!