Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024576.1 Corchorus olitorius cultivar O-4 contig24609, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7195
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:2055 original size:19 final size:18

Alignment explanation


    Indices: 2026--2061  Score: 63
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       2016 GCATGAATAA

                              
       2026 AATTAAAATGCTAATGCT
          1 AATTAAAATGCTAATGCT

                              
       2044 AATTAAATATGCTAATGC
          1 AATTAAA-ATGCTAATGC

       2062 AAAATAAAAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33


Consensus pattern (18 bp):   
AATTAAAATGCTAATGCT

Found at i:2069 original size:19 final size:18

Alignment explanation


    Indices: 2024--2070  Score: 58
    Period size: 19  Copynumber: 2.5  Consensus size: 18

       2014 ATGCATGAAT

                               
       2024 AAAATTAAAATGCTAATGC
          1 AAAA-TAAAATGCTAATGC

            *  *               
       2043 TAATTAAATATGCTAATGC
          1 AAAATAAA-ATGCTAATGC

                     
       2062 AAAATAAAA
          1 AAAATAAAA

       2071 AAATGCTAAT


Statistics
Matches: 23,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  18    5  0.22
  19   18  0.78

ACGTcount: A:0.55, C:0.09, G:0.09, T:0.28


Consensus pattern (18 bp):   
AAAATAAAATGCTAATGC
Done.