Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024578.1 Corchorus olitorius cultivar O-4 contig24611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62576

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1613--1646
16
2.2
15
89
5
50
20
14
17
47
1.83
2510--2558
26
1.9
26
91
4
82
24
16
12
46
1.81
2524--2574
25
2.0
25
81
7
59
27
17
13
41
1.87
12154--12262
54
2.0
54
94
0
191
45
5
11
37
1.63
12154--12237
27
3.1
27
66
17
75
48
5
9
35
1.60
18180--18228
22
2.1
24
85
7
66
22
22
10
44
1.82
18334--18366
16
2.1
16
94
0
57
33
18
15
33
1.92
25057--25296
52
4.6
51
83
4
311
38
13
17
30
1.88
28646--28695
25
2.0
26
92
4
84
52
10
22
16
1.73
41338--41945
54
11.5
54
75
7
433
27
19
22
30
1.98
41358--41727
108
3.4
108
87
0
488
28
21
22
28
1.99
41684--41769
42
2.0
42
86
0
118
27
22
23
26
1.99
41630--41814
96
1.9
96
87
0
271
27
19
22
31
1.98
41578--41847
150
1.8
150
86
1
398
28
19
21
31
1.97
41524--41901
204
1.9
204
82
3
483
28
18
21
31
1.97
45945--46024
41
2.0
41
94
0
142
46
15
17
21
1.84
56148--56296
53
2.8
53
90
0
235
29
12
18
39
1.87
57814--58063
125
2.0
125
96
0
455
44
26
6
24
1.76
59900--59947
5
8.8
5
80
15
51
58
4
0
37
1.18
60139--60185
21
2.3
20
78
10
51
53
6
4
36
1.46
62148--62186
16
2.5
15
84
12
51
87
0
7
5
0.68

Tables:   1

The End!