Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024582.1 Corchorus olitorius cultivar O-4 contig24615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56497

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1913--2183
135
2.0
135
99
0
533
35
22
22
19
1.96
2682--2706
2
12.5
2
100
0
50
52
0
0
48
1.00
2810--3000
58
3.3
59
89
2
251
31
34
18
15
1.92
3789--4912
83
13.5
84
75
7
321
26
27
26
19
1.99
3595--5184
55
28.4
55
77
6
652
27
26
27
18
1.98
4101--5177
194
5.5
200
75
9
745
27
26
27
17
1.98
3573--5177
28
57.4
28
73
7
750
27
26
27
18
1.98
17286--17434
81
1.9
80
88
4
228
32
14
16
35
1.90
20929--20974
22
2.1
21
84
4
56
28
13
4
54
1.57
21117--21163
22
2.1
22
88
0
67
42
10
8
38
1.70
21197--21269
38
1.9
38
88
0
110
35
19
6
38
1.78
21130--21396
22
12.5
22
71
12
162
35
16
8
39
1.79
22414--22442
2
15.0
2
92
7
51
51
0
0
48
1.00
22936--22973
20
2.0
18
90
10
58
84
0
15
0
0.63
26981--27070
30
3.0
30
93
0
153
16
27
13
42
1.86
28698--28749
25
2.1
25
92
0
86
25
19
7
48
1.75
28979--29003
2
12.5
2
100
0
50
52
0
0
48
1.00
32201--32446
52
4.7
52
91
2
404
29
19
13
37
1.90
32409--32510
36
2.9
33
83
11
116
25
16
19
38
1.92
45408--45439
11
2.8
12
86
13
50
37
6
18
37
1.76
45420--45455
18
1.9
18
88
5
54
38
2
22
36
1.69
48120--48179
30
2.0
30
93
0
102
18
26
13
41
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49305--49368
3
21.3
3
96
0
119
32
1
0
65
1.02
51037--51084
19
2.6
19
86
3
62
37
2
0
60
1.09
52591--52697
53
2.0
53
94
0
187
35
10
19
34
1.86
53870--53916
21
2.2
22
84
3
60
53
10
2
34
1.48
54134--54180
21
2.2
22
88
3
69
53
12
2
31
1.51
55076--55109
2
17.0
2
100
0
68
50
0
0
50
1.00
55222--55480
127
2.0
128
84
8
339
36
9
1
52
1.46
55466--55504
14
2.9
13
80
3
51
41
2
2
53
1.28

Tables:   1

The End!