Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024587.1 Corchorus olitorius cultivar O-4 contig24620, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19429
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:3009 original size:22 final size:22

Alignment explanation


    Indices: 2983--3024  Score: 84
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2973 CCAGATTTAC

                                  
       2983 TAATGATAATGTATTATTGCTT
          1 TAATGATAATGTATTATTGCTT

                                
       3005 TAATGATAATGTATTATTGC
          1 TAATGATAATGTATTATTGC

       3025 GGGGATTCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48


Consensus pattern (22 bp):   
TAATGATAATGTATTATTGCTT

Found at i:6874 original size:9 final size:9

Alignment explanation


    Indices: 6860--6885  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       6850 TCCTTTGTGC

                     
       6860 CTTACCGTG
          1 CTTACCGTG

                     
       6869 CTTACCGTG
          1 CTTACCGTG

                    
       6878 CTTACCGT
          1 CTTACCGT

       6886 TATGCCTCTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.12, C:0.35, G:0.19, T:0.35


Consensus pattern (9 bp):   
CTTACCGTG
Done.