Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024590.1 Corchorus olitorius cultivar O-4 contig24623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30062

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4776--5118
171
2.0
171
99
0
677
24
11
23
41
1.86
13941--14013
27
2.7
27
83
8
96
43
12
19
24
1.85
16113--16167
21
2.7
21
80
8
60
21
20
16
41
1.90
21637--21750
47
2.4
47
95
0
201
32
6
29
31
1.82
22381--22448
25
2.6
26
76
6
66
54
13
14
17
1.71
24271--24390
16
7.6
16
80
0
134
5
15
40
38
1.71
24271--24390
32
3.8
32
92
1
188
5
15
40
38
1.71
24835--24906
31
2.3
31
75
17
78
61
8
4
26
1.43
25133--25171
2
19.5
2
94
0
69
48
2
0
48
1.15
25347--25409
23
2.7
23
87
0
99
1
22
50
25
1.58
25346--25409
17
3.7
18
83
6
78
1
21
50
26
1.58
25346--25410
6
11.2
6
80
12
73
1
21
49
27
1.59
26898--26947
21
2.4
21
89
0
73
18
48
24
10
1.78
27351--27380
15
2.1
14
93
6
51
13
16
6
63
1.50

Tables:   1

The End!