Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024591.1 Corchorus olitorius cultivar O-4 contig24624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25120

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2006--2046
20
2.0
20
95
0
73
7
29
17
46
1.74
2145--2202
29
2.0
29
96
0
107
17
32
10
39
1.83
2178--2381
47
4.4
47
91
1
320
12
28
20
38
1.89
2178--2381
93
2.2
94
90
0
320
12
28
20
38
1.89
5787--5940
70
2.2
70
91
2
247
19
13
29
37
1.90
10639--10665
1
27.0
1
100
0
54
100
0
0
0
0.00
11648--11712
20
3.2
20
73
4
76
58
7
6
27
1.50
14566--14598
13
2.5
13
90
9
50
84
0
15
0
0.61
15350--15529
89
2.0
89
93
4
310
33
13
12
40
1.82
17931--17968
2
19.5
2
94
5
69
50
0
0
50
1.00
18559--18591
15
2.2
15
94
0
57
51
12
0
36
1.39
20202--20409
22
9.6
22
69
9
113
38
12
12
35
1.82
20388--20472
42
2.0
42
86
4
118
35
8
21
35
1.83
20630--20753
22
5.6
22
83
3
144
35
8
16
39
1.79
20615--20766
66
2.3
67
81
7
170
35
8
15
40
1.78
24053--24114
7
8.7
7
86
10
90
41
14
1
41
1.55
24053--24114
23
3.0
20
84
11
79
41
14
1
41
1.55
24053--24123
36
1.9
37
97
2
135
42
14
2
40
1.60

Tables:   1

The End!