Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024595.1 Corchorus olitorius cultivar O-4 contig24628, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3500
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24


Found at i:3134 original size:50 final size:50

Alignment explanation


    Indices: 3075--3301  Score: 350
    Period size: 50  Copynumber: 4.5  Consensus size: 50

       3065 ACCAGATATC

                                                              
       3075 AAGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                          *                   
       3125 AAGATTGAATTGGTAGACAGTTCAAAGGATGAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                                              
       3175 AAGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                                       *         *         *  *
       3225 ATAG-TTGAATTGGTAGACAGTTCAAAAGATAAGCGGGAGACGGTCCCTTA
          1 A-AGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

                   *      *     *       
       3275 AATG-TTAAATTGGGAGACAATTCAAAG
          1 AA-GATTGAATTGGTAGACAGTTCAAAG

       3302 AAGTTGATCG


Statistics
Matches: 165,  Mismatches: 10, Indels: 4
        0.92            0.06        0.02

Matches are distributed among these distances:
  49    1  0.01
  50  162  0.98
  51    2  0.01

ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26


Consensus pattern (50 bp):   
AAGATTGAATTGGTAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTT

Done.