Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024598.1 Corchorus olitorius cultivar O-4 contig24631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.42


Found at i:808 original size:15 final size:15

Alignment explanation


    Indices: 763--810  Score: 55
    Period size: 15  Copynumber: 3.2  Consensus size: 15

        753 AGGATAGAAA

                          * 
        763 ATTGTTTGTTGT-TGG
          1 ATTGTTT-TTGTGTTG

                            
        778 ATTGTTTTTG-GATTG
          1 ATTGTTTTTGTG-TTG

                           
        793 ATTGTTTTTGTGTTG
          1 ATTGTTTTTGTGTTG

               
        808 ATT
          1 ATT

        811 ATCCCCCAAT


Statistics
Matches: 29,  Mismatches: 1, Indels: 6
        0.81            0.03        0.17

Matches are distributed among these distances:
  14    3  0.10
  15   25  0.86
  16    1  0.03

ACGTcount: A:0.10, C:0.00, G:0.27, T:0.62


Consensus pattern (15 bp):   
ATTGTTTTTGTGTTG
Done.