Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024601.1 Corchorus olitorius cultivar O-4 contig24634, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7416

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1840--1881
21
2.0
22
90
4
68
23
28
11
35
1.91
4367--4402
18
1.9
19
88
5
56
69
13
2
13
1.30
4705--4738
11
2.9
12
86
8
52
82
0
17
0
0.67
5006--5301
50
5.9
50
89
0
421
32
17
14
35
1.91
5005--5299
150
2.0
150
91
0
482
31
17
14
35
1.91
5972--6159
50
3.8
50
97
0
358
30
30
12
26
1.93
6216--6425
52
4.1
50
95
2
357
33
10
27
28
1.90
6216--6425
102
2.1
102
92
4
361
33
10
27
28
1.90
6216--6452
102
2.3
104
89
5
333
35
9
26
28
1.88
6832--6875
21
2.1
21
100
0
88
20
22
18
38
1.93
6900--6992
46
2.0
46
95
0
168
25
25
8
39
1.84

Tables:   1

The End!