Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024604.1 Corchorus olitorius cultivar O-4 contig24637, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24286

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3942--3989
23
2.1
22
88
11
71
58
0
0
41
0.98
3947--4029
22
3.8
21
73
17
64
57
1
2
38
1.19
8356--8408
27
2.0
27
88
7
81
41
9
1
47
1.47
10341--10418
22
3.6
21
81
6
84
41
10
8
39
1.71
10297--10422
66
1.9
65
80
9
148
39
9
10
40
1.72
10656--10819
89
1.8
89
92
0
274
41
11
14
32
1.82
11303--11621
159
2.0
159
97
0
602
29
11
18
41
1.85
12261--12285
13
1.9
13
100
0
50
16
24
0
60
1.36
13040--13065
13
2.0
13
100
0
52
23
7
15
53
1.67
16948--16978
8
3.9
8
95
0
53
90
6
0
3
0.55
16942--16981
17
2.3
18
86
4
55
87
7
0
5
0.66
17227--17259
16
2.0
17
94
5
59
54
3
0
42
1.15
23145--23247
51
2.0
50
81
5
118
20
20
13
45
1.84

Tables:   1

The End!