Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024608.1 Corchorus olitorius cultivar O-4 contig24641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20079

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
626--750
24
5.2
23
76
20
105
35
12
8
43
1.74
636--750
23
4.8
23
79
17
94
33
13
9
43
1.76
1112--1150
16
2.4
16
100
0
78
66
12
5
15
1.41
1911--1936
11
2.4
11
100
0
52
69
7
15
7
1.35
5178--5274
32
3.0
32
78
3
97
23
19
21
35
1.96
10099--10445
161
2.1
162
88
2
511
29
19
19
31
1.97
12573--12922
54
6.5
54
85
4
454
34
22
18
25
1.96
15438--15496
6
9.8
6
90
5
84
88
11
0
0
0.53
15438--15495
1
58.0
1
78
0
62
89
10
0
0
0.48
19318--19485
21
7.6
21
69
15
88
18
5
54
21
1.63
19316--19482
69
2.5
66
78
12
189
18
5
55
20
1.62
19367--19424
27
2.1
27
83
0
71
15
5
58
20
1.56
19331--19440
48
2.4
45
83
4
121
18
6
54
20
1.65
19313--19458
24
6.3
24
72
12
101
17
6
54
21
1.64
19880--19928
20
2.4
20
82
3
53
18
4
59
18
1.53
19892--19951
21
2.9
21
82
2
68
21
5
51
21
1.66
20029--20069
21
2.0
21
90
0
64
19
4
58
17
1.56

Tables:   1

The End!