Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002461.1 Corchorus olitorius cultivar O-4 contig02461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 677

Length: 1129
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Found at i:597 original size:18 final size:18

Alignment explanation


    Indices: 574--638  Score: 112
    Period size: 18  Copynumber: 3.6  Consensus size: 18

        564 CGATCGATAT

                              
        574 CGTCACTATCATCAATAG
          1 CGTCACTATCATCAATAG

                              
        592 CGTCACTATCATCAATAG
          1 CGTCACTATCATCAATAG

                    *        *
        610 CGTCACTAGCATCAATAT
          1 CGTCACTATCATCAATAG

                       
        628 CGTCACTATCA
          1 CGTCACTATCA

        639 CTATCATCCA


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   44  1.00

ACGTcount: A:0.32, C:0.29, G:0.11, T:0.28


Consensus pattern (18 bp):   
CGTCACTATCATCAATAG

Found at i:637 original size:9 final size:9

Alignment explanation


    Indices: 571--637  Score: 53
    Period size: 9  Copynumber: 7.4  Consensus size: 9

        561 TCACGATCGA

                     
        571 TATCGTCAC
          1 TATCGTCAC

                *   *
        580 TATCATCAA
          1 TATCGTCAC

              *      
        589 TAGCGTCAC
          1 TATCGTCAC

                *   *
        598 TATCATCAA
          1 TATCGTCAC

              *      
        607 TAGCGTCAC
          1 TATCGTCAC

              * *   *
        616 TAGCATCAA
          1 TATCGTCAC

                     
        625 TATCGTCAC
          1 TATCGTCAC

                
        634 TATC
          1 TATC

        638 ACTATCATCC


Statistics
Matches: 42,  Mismatches: 16, Indels: 0
        0.72            0.28        0.00

Matches are distributed among these distances:
   9   42  1.00

ACGTcount: A:0.31, C:0.28, G:0.10, T:0.30


Consensus pattern (9 bp):   
TATCGTCAC
Done.