Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024611.1 Corchorus olitorius cultivar O-4 contig24644, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1603
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37


Found at i:161 original size:33 final size:33

Alignment explanation


    Indices: 70--166  Score: 115
    Period size: 33  Copynumber: 2.9  Consensus size: 33

         60 AAGAGTAATT

                    *      *         *   * * 
         70 CTAAATCTGTTTTAGATGTTGTTTGCGATAATA
          1 CTAAATCTATTTTAGGTGTTGTTTGTGATGACA

                 *   *                        
        103 CTAAACCTAATTT-GAGTGTTGTTTGTGATGACA
          1 CTAAATCTATTTTAG-GTGTTGTTTGTGATGACA

                                           
        136 CTAAATCTATTTTAGGTGTTGTTTGTGATGA
          1 CTAAATCTATTTTAGGTGTTGTTTGTGATGA

        167 AACAAATTCT


Statistics
Matches: 53,  Mismatches: 9, Indels: 4
        0.80            0.14        0.06

Matches are distributed among these distances:
  32    1  0.02
  33   51  0.96
  34    1  0.02

ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44


Consensus pattern (33 bp):   
CTAAATCTATTTTAGGTGTTGTTTGTGATGACA
Done.